pappso::cbor::mzcbor::SelectedIon Struct Reference

#include <precursor.h>

Public Member Functions
void	fromCbor (CborStreamReader &reader)
int	getChargeState () const
qint64	getIntensity () const
double	getMz () const

Public Attributes
CvParamMap	cvParamMap

Detailed Description

Definition at line 69 of file precursor.h.

Member Function Documentation

fromCbor()

void pappso::cbor::mzcbor::SelectedIon::fromCbor

(

CborStreamReader &

reader

)

Definition at line 134 of file precursor.cpp.

{
  QString txt_value;
  reader.enterContainer();
  qDebug() << txt_value;
  while(reader.hasNext() && (!reader.isInvalid()))
    {
      if(reader.isString())
        {
          if(reader.decodeString(txt_value))
            {
              qDebug() << txt_value;
              if(txt_value == "cvParam")
                {
                  cvParamMap.fromCbor(reader);
                  // reader.next();
                }
              else
                {
                  reader.next();
                }
            }
          else
            {
              reader.next();
            }
        }
      else
        {
          reader.next();
        }
    }
  reader.leaveContainer();
}

References cvParamMap, and pappso::cbor::CborStreamReader::decodeString().

Referenced by pappso::cbor::mzcbor::Precursor::fromCbor().

getChargeState()

int pappso::cbor::mzcbor::SelectedIon::getChargeState

(

)

const

Definition at line 171 of file precursor.cpp.

{
 
  //      <cvParam cvRef="MS" accession="MS:1000041" value="3" name="charge state" />
 
  auto it = cvParamMap.find("MS:1000041");
  if(it == cvParamMap.end())
    {
      throw pappso::ExceptionNotFound(
        QObject::tr("Charge state not found in SelectedIon cvParam map"));
    }
  qDebug() << it->first << " " << it->second.valueInt;
  return it->second.valueInt;
}

References cvParamMap.

getIntensity()

qint64 pappso::cbor::mzcbor::SelectedIon::getIntensity

(

)

const

Definition at line 187 of file precursor.cpp.

{
 
  //         <cvParam cvRef="MS" accession="MS:1000042" value="248032.25" name="peak intensity"
  //         unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS" />
 
  auto it = cvParamMap.find("MS:1000042");
  if(it == cvParamMap.end())
    {
      throw pappso::ExceptionNotFound(
        QObject::tr("Intensity not found in SelectedIon cvParam map"));
    }
  qDebug() << it->first << " " << it->second.valueInt;
  return it->second.valueInt;
}

References cvParamMap.

getMz()

double pappso::cbor::mzcbor::SelectedIon::getMz

(

)

const

Definition at line 204 of file precursor.cpp.

{
 
  //     <cvParam cvRef="MS" accession="MS:1000744" value="506.2513" name="selected ion m/z"
  //     unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
 
  auto it = cvParamMap.find("MS:1000744");
  if(it == cvParamMap.end())
    {
      throw pappso::ExceptionNotFound(QObject::tr("m/z not found in SelectedIon cvParam map"));
    }
  qDebug() << it->first << " " << it->second.valueDouble;
  return it->second.valueDouble;
}

References cvParamMap.

Member Data Documentation

cvParamMap

CvParamMap pappso::cbor::mzcbor::SelectedIon::cvParamMap

Definition at line 77 of file precursor.h.

Referenced by fromCbor(), getChargeState(), getIntensity(), and getMz().

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The documentation for this struct was generated from the following files:

• pappsomspp/core/processing/cbor/mzcbor/precursor.h
• pappsomspp/core/processing/cbor/mzcbor/precursor.cpp