highrespeakpicker.h

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// Copyright 2026 Filippo Rusconi
// Inspired by code in OpenMS, by Lars Nilse
 
#pragma once
 
/////////////////////// stdlib includes
 
 
/////////////////////// Qt includes
#include <QList>
#include <QMap>
 
/////////////////////// pappsomspp includes
#include "pappsomspp/core/trace/trace.h"
 
 
/////////////////////// Local includes
#include "pappsomspp/export-import-config.h"
 
namespace pappso
{
 
 
class PMSPP_LIB_DECL HighResPeakPicker
{
 
  public:
  struct Parameters
  {
    double signalToNoise       = 0.8;
    qsizetype missingPeakCount = 0;
  };
 
  HighResPeakPicker(Parameters &parameters);
  virtual ~HighResPeakPicker();
 
  struct PeakRange
  {
    double mz_start;
    double mz_stop;
  };
 
  void pick(const Trace &trace, Trace &picked_peaks, QList<PeakRange> &peak_ranges);
 
  protected:
  Parameters m_parameters;
};
 
 
} // namespace pappso