aminoacid_scoring_scheme.hpp File Reference

Provides seqan3::aminoacid_scoring_scheme. More...

#include <algorithm>
#include <seqan3/alignment/scoring/scoring_scheme_base.hpp>
#include <seqan3/alphabet/aminoacid/aa27.hpp>

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Classes
class	seqan3::aminoacid_scoring_scheme< score_type >
	A data structure for managing and computing the score of two amino acids. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.

Enumerations
enum class	seqan3::aminoacid_similarity_matrix { seqan3::aminoacid_similarity_matrix::blosum30 , seqan3::aminoacid_similarity_matrix::blosum45 , seqan3::aminoacid_similarity_matrix::blosum62 , seqan3::aminoacid_similarity_matrix::blosum80 }
	Identifiers for amino acid similarity matrixes. More...

Detailed Description

Provides seqan3::aminoacid_scoring_scheme.

Author

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>

Rene Rahn <rene.rahn AT fu-berlin.de>